OMIXER

Full Stack Bioinformatics

Tailored to your needs!

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Our Services

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Bioinformatic Solutions

- Workflow automation and optimization

- Genome assembly, variant calling, annotation, comparative genomics and phylogenomics

- Heterogeneous data integration and machine learning

Web App development

- Online, interactive data analytics and visualization

- Dashboards

- REST APIs

- SQL and NoSQL databases

- Cloud/Docker deployment

Microbiome Analytics

- Metagenomic assembly, binning, and gene cataloging

- Functional and Taxonomic analysis

- Metabolic pathway mapping and visualization

Portfolio

A selection of bioinformatic web apps for online data analysis and visualization

FuncTree2

Visualization of -omics profiles on interactive biological ontologies. >>

GOmixer

Gut meta-omics data analysis and visualization in one GO >>

JMDB

Microbiome cohort analytics and interactive visualization

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Clients

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Who we are

Founder

Youssef Darzi

Youssef is a bioinformatician with 15 years of experience. As Head of Bioinformatics at a top Japanese genetic testing firm, he led various critical projects, such as a clinical WGS pipeline, co-designing an Asian Ancestry kit, and streamlining and automating their bioinformatics processes. Youssef co-developed iPath3 and Functree2 while a PostDoc at the Yamada Lab (Tokyo Tech). During his PhD at the lab of Jeroen Raes (KU Leuven / VUB), he worked on gut microbiome multi-omics integration, and pioneered biome-specific analysis of meta-omics data through GOmixer, the GMMs and the GBMs.

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